+34 912998863 borja.ibarra@gmail.com

Publications

2018

Dynamics of individual molecular shuttles under mechanical force

Teresa Naranjo, Kateryna M. Lemishko, Sara de Lorenzo, Álvaro Somoza, Felix Ritort, Emilio M. Pérez & Borja Ibarra

Nature Communications volume 9, Article number: 4512 (2018)

2017

Mechanical measurement of hydrogen bonded host-guest systems under non-equilibrium, near-physiological conditions

Naranjo T, Cerrón F, Nieto-Ortega B, Latorre A, Somoza Á, Ibarra B*, Pérez EM*.

*corresponding authors

2017

DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein

Morin JA, Cerrón F, Jarillo J, Beltran-Heredia E, Ciesielski GL, Arias-Gonzalez JR, Kaguni LS, Cao FJ, Ibarra B.

Nucleic Acids Res. 2017 May 9. doi: 10.1093/nar/gkx395

2017

Mechanical measurement of hydrogen bonded host-guest systems under non-equilibrium, near-physiological conditions

Naranjo T, Cerrón F, Nieto-Ortega B, Latorre A, Somoza Á, Ibarra B*, Pérez EM*.

*corresponding authors

PLoS One. 2017 Apr 5;12(4):e0174830

2017

DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein

Morin JA, Cerrón F, Jarillo J, Beltran-Heredia E, Ciesielski GL, Arias-Gonzalez JR, Kaguni LS, Cao FJ, Ibarra B.

Nucleic Acids Res. 2017 May 9. doi: 10.1093/nar/gkx395

2017

Mechanics, thermodynamics, and kinetics of ligand binding to biopolymers

Jarillo J, Morín JA, Beltrán-Heredia E, Villaluenga JP, Ibarra B, Cao FJ.

PLoS One. 2017 Apr 5;12(4):e0174830

2016

Kinetic modeling of molecular motors: pause model and parameter determination from single-molecule experiments

José A Morin, Borja Ibarra and Francisco J Cao.

Journal of Statistical Mechanics: Theory and Experiment, Volume 2016, May 2016

2017

Mechanics, thermodynamics, and kinetics of ligand binding to biopolymers

Jarillo J, Morín JA, Beltrán-Heredia E, Villaluenga JP, Ibarra B, Cao FJ.

PLoS One. 2017 Apr 5;12(4):e0174830

2016

Kinetic modeling of molecular motors: pause model and parameter determination from single-molecule experiments

José A Morin, Borja Ibarra and Francisco J Cao.

Journal of Statistical Mechanics: Theory and Experiment, Volume 2016, May 2016

2015

Mechano-chemical kinetics of DNA replication: identification of the translocation step of a replicative DNA polymerase

J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra

Nucleic Acid Research, 2015

2012

Manipulation of single polymerase-dna complexes: a mechanical view of dna unwinding during replication

Morin J.A., Cao F.J., Valpuesta J.M., Carrascosa J.L., Salas M., Ibarra B.

Cell Cycle 11(16): 2967- 2968

2015

Mechano-chemical kinetics of DNA replication: identification of the translocation step of a replicative DNA polymerase

J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra

Nucleic Acid Research, 2015

2012

Manipulation of single polymerase-dna complexes: a mechanical view of dna unwinding during replication

Morin J.A., Cao F.J., Valpuesta J.M., Carrascosa J.L., Salas M., Ibarra B.

Cell Cycle 11(16): 2967- 2968

2012

Active dna unwinding dynamics during processive dna replication

J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra

Proceedings of the National Academic of Sciences USA 109(21): 8115-20

2012

Mechanical stability of low-humidity single DNA molecules

Hormeño S., Ibarra B., Valpuesta J.M., Carrascosa J.L., Ricardo Arias-Gonzalez J.

Biopolymers 97(4): 199-208

2012

Active dna unwinding dynamics during processive dna replication

J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra

Proceedings of the National Academic of Sciences USA 109(21): 8115-20

2012

Mechanical stability of low-humidity single DNA molecules

Hormeño S., Ibarra B., Valpuesta J.M., Carrascosa J.L., Ricardo Arias-Gonzalez J.

Biopolymers 97(4): 199-208

2011

Mechanical properties of high-G.C content DNA with a-type base-stacking

Hormeño S., Ibarra B., Carrascosa J.L., Valpuesta J.M., Moreno-Herrero F., Arias-Gonzalez JR.

Biophysical Journal 100(8): 1996-2005

2011

Condensation prevails over B-A transition in the structure of DNA at low humidity

Hormeño S., Moreno-Herrero F., Ibarra B., Carrascosa J.L., Valpuesta J.M., Arias-Gonzalez J.R.

Biophysical Journal 100(8): 2006-2015

2011

Mechanical properties of high-G.C content DNA with a-type base-stacking

Hormeño S., Ibarra B., Carrascosa J.L., Valpuesta J.M., Moreno-Herrero F., Arias-Gonzalez JR.

Biophysical Journal 100(8): 1996-2005

2011

Condensation prevails over B-A transition in the structure of DNA at low humidity

Hormeño S., Moreno-Herrero F., Ibarra B., Carrascosa J.L., Valpuesta J.M., Arias-Gonzalez J.R.

Biophysical Journal 100(8): 2006-2015

2009

Proofreading Dynamics of a Processive DNA Polymerase

Ibarra, B., Chemla Y., Plyasunov, S., Smith S.B., Salas M., Bustamante C.

EMBO Journal 28: 2794-2802

2009

Single centrosome manipulation reveals its electric charge and associated dynamic structure

Hormeño S., Ibarra B., Chichón F., Habermann K., Lange B., Valpuesta J.M., Carrascosa J.L., Arias-González J.R.

Biophysical Journal 97: 1022-1030

2009

Proofreading Dynamics of a Processive DNA Polymerase

Ibarra, B., Chemla Y., Plyasunov, S., Smith S.B., Salas M., Bustamante C.

EMBO Journal 28: 2794-2802

2009

Single centrosome manipulation reveals its electric charge and associated dynamic structure

Hormeño S., Ibarra B., Chichón F., Habermann K., Lange B., Valpuesta J.M., Carrascosa J.L., Arias-González J.R.

Biophysical Journal 97: 1022-1030