+34 912998863 borja.ibarra@gmail.com

Publications

2019

Dynamic constriction and fission of ER membranes by reticulon

J. Espadas, D. Pendin, R. Bocanegra, A. Escalada, G. Misticoni, T. Trevisan, A. Velasco del Olmo, S. Bova, B. Ibarra, P. I. Kuzmin, A.V. Shnyrova, V. A. Frolov, A. Daga

bioRxiv 2019 https://doi.org/10.1101/472829. Peer-review publication in progress

2019

Replicative DNA polymerases promote active displacement of SSB proteins during lagging strand synthesis

Cerron, Fernando; de Lorenzo, Sara; Lemishko, Kateryna; Ciesielski, Grzegorz ; Kaguni, Laurie; Cao, Francisco; Ibarra, Borja

Accepted in Nucleic Acids Research
25-Mar-2019, coming online soon!

2018

Dynamics of individual molecular shuttles under mechanical force

Teresa Naranjo, Kateryna M. Lemishko, Sara de Lorenzo, Álvaro Somoza, Felix Ritort, Emilio M. Pérez & Borja Ibarra

Nature Communications volume 9, Article number: 4512 (2018)

 

2017

Mechanical measurement of hydrogen bonded host-guest systems under non-equilibrium, near-physiological conditions

Naranjo T, Cerrón F, Nieto-Ortega B, Latorre A, Somoza Á, Ibarra B*, Pérez EM*.

*corresponding authors

Chemical Science 2017 Sep 1; 8(9): 6037–6041.

2017

DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein

Morin JA, Cerrón F, Jarillo J, Beltran-Heredia E, Ciesielski GL, Arias-Gonzalez JR, Kaguni LS, Cao FJ, Ibarra B.

Nucleic Acids Research 2017 Jul 7;45(12):7237-7248.

2017

Mechanical measurement of hydrogen bonded host-guest systems under non-equilibrium, near-physiological conditions

Naranjo T, Cerrón F, Nieto-Ortega B, Latorre A, Somoza Á, Ibarra B*, Pérez EM*.

*corresponding authors

PLoS One. 2017 Apr 5;12(4):e0174830

2017

DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein

Morin JA, Cerrón F, Jarillo J, Beltran-Heredia E, Ciesielski GL, Arias-Gonzalez JR, Kaguni LS, Cao FJ, Ibarra B.

Nucleic Acids Res. 2017 May 9. doi: 10.1093/nar/gkx395

2017

Mechanics, thermodynamics, and kinetics of ligand binding to biopolymers

Jarillo J, Morín JA, Beltrán-Heredia E, Villaluenga JP, Ibarra B, Cao FJ.

PLoS One. 2017 Apr 5;12(4):e0174830

2016

Kinetic modeling of molecular motors: pause model and parameter determination from single-molecule experiments

José A Morin, Borja Ibarra and Francisco J Cao.

Journal of Statistical Mechanics: Theory and Experiment, Volume 2016, May 2016

2017

Mechanics, thermodynamics, and kinetics of ligand binding to biopolymers

Jarillo J, Morín JA, Beltrán-Heredia E, Villaluenga JP, Ibarra B, Cao FJ.

PLoS One. 2017 Apr 5;12(4):e0174830

2016

Kinetic modeling of molecular motors: pause model and parameter determination from single-molecule experiments

José A Morin, Borja Ibarra and Francisco J Cao.

Journal of Statistical Mechanics: Theory and Experiment, Volume 2016, May 2016

2015

Mechano-chemical kinetics of DNA replication: identification of the translocation step of a replicative DNA polymerase

J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra

Nucleic Acid Research, 2015

2012

Manipulation of single polymerase-dna complexes: a mechanical view of dna unwinding during replication

Morin J.A., Cao F.J., Valpuesta J.M., Carrascosa J.L., Salas M., Ibarra B.

Cell Cycle 11(16): 2967- 2968

2015

Mechano-chemical kinetics of DNA replication: identification of the translocation step of a replicative DNA polymerase

J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra

Nucleic Acid Research, 2015

2012

Manipulation of single polymerase-dna complexes: a mechanical view of dna unwinding during replication

Morin J.A., Cao F.J., Valpuesta J.M., Carrascosa J.L., Salas M., Ibarra B.

Cell Cycle 11(16): 2967- 2968

2012

Active dna unwinding dynamics during processive dna replication

J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra

Proceedings of the National Academic of Sciences USA 109(21): 8115-20

2012

Mechanical stability of low-humidity single DNA molecules

Hormeño S., Ibarra B., Valpuesta J.M., Carrascosa J.L., Ricardo Arias-Gonzalez J.

Biopolymers 97(4): 199-208

2012

Active dna unwinding dynamics during processive dna replication

J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra

Proceedings of the National Academic of Sciences USA 109(21): 8115-20

2012

Mechanical stability of low-humidity single DNA molecules

Hormeño S., Ibarra B., Valpuesta J.M., Carrascosa J.L., Ricardo Arias-Gonzalez J.

Biopolymers 97(4): 199-208

2011

Mechanical properties of high-G.C content DNA with a-type base-stacking

Hormeño S., Ibarra B., Carrascosa J.L., Valpuesta J.M., Moreno-Herrero F., Arias-Gonzalez JR.

Biophysical Journal 100(8): 1996-2005

2011

Condensation prevails over B-A transition in the structure of DNA at low humidity

Hormeño S., Moreno-Herrero F., Ibarra B., Carrascosa J.L., Valpuesta J.M., Arias-Gonzalez J.R.

Biophysical Journal 100(8): 2006-2015

2011

Mechanical properties of high-G.C content DNA with a-type base-stacking

Hormeño S., Ibarra B., Carrascosa J.L., Valpuesta J.M., Moreno-Herrero F., Arias-Gonzalez JR.

Biophysical Journal 100(8): 1996-2005

2011

Condensation prevails over B-A transition in the structure of DNA at low humidity

Hormeño S., Moreno-Herrero F., Ibarra B., Carrascosa J.L., Valpuesta J.M., Arias-Gonzalez J.R.

Biophysical Journal 100(8): 2006-2015

2009

Proofreading Dynamics of a Processive DNA Polymerase

Ibarra, B., Chemla Y., Plyasunov, S., Smith S.B., Salas M., Bustamante C.

EMBO Journal 28: 2794-2802

2009

Single centrosome manipulation reveals its electric charge and associated dynamic structure

Hormeño S., Ibarra B., Chichón F., Habermann K., Lange B., Valpuesta J.M., Carrascosa J.L., Arias-González J.R.

Biophysical Journal 97: 1022-1030

2009

Proofreading Dynamics of a Processive DNA Polymerase

Ibarra, B., Chemla Y., Plyasunov, S., Smith S.B., Salas M., Bustamante C.

EMBO Journal 28: 2794-2802

2009

Single centrosome manipulation reveals its electric charge and associated dynamic structure

Hormeño S., Ibarra B., Chichón F., Habermann K., Lange B., Valpuesta J.M., Carrascosa J.L., Arias-González J.R.

Biophysical Journal 97: 1022-1030