Publications
2018
Dynamics of individual molecular shuttles under mechanical force
Teresa Naranjo, Kateryna M. Lemishko, Sara de Lorenzo, Álvaro Somoza, Felix Ritort, Emilio M. Pérez & Borja Ibarra
Nature Communications volume 9, Article number: 4512 (2018)
2017
Mechanical measurement of hydrogen bonded host-guest systems under non-equilibrium, near-physiological conditions
Naranjo T, Cerrón F, Nieto-Ortega B, Latorre A, Somoza Á, Ibarra B*, Pérez EM*.
*corresponding authors
2017
DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein
Morin JA, Cerrón F, Jarillo J, Beltran-Heredia E, Ciesielski GL, Arias-Gonzalez JR, Kaguni LS, Cao FJ, Ibarra B.
Nucleic Acids Res. 2017 May 9. doi: 10.1093/nar/gkx395
2017
Mechanical measurement of hydrogen bonded host-guest systems under non-equilibrium, near-physiological conditions
Naranjo T, Cerrón F, Nieto-Ortega B, Latorre A, Somoza Á, Ibarra B*, Pérez EM*.
*corresponding authors
PLoS One. 2017 Apr 5;12(4):e0174830
2017
DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein
Morin JA, Cerrón F, Jarillo J, Beltran-Heredia E, Ciesielski GL, Arias-Gonzalez JR, Kaguni LS, Cao FJ, Ibarra B.
Nucleic Acids Res. 2017 May 9. doi: 10.1093/nar/gkx395
2017
Mechanics, thermodynamics, and kinetics of ligand binding to biopolymers
Jarillo J, Morín JA, Beltrán-Heredia E, Villaluenga JP, Ibarra B, Cao FJ.
PLoS One. 2017 Apr 5;12(4):e0174830
2016
Kinetic modeling of molecular motors: pause model and parameter determination from single-molecule experiments
José A Morin, Borja Ibarra and Francisco J Cao.
Journal of Statistical Mechanics: Theory and Experiment, Volume 2016, May 2016
2017
Mechanics, thermodynamics, and kinetics of ligand binding to biopolymers
Jarillo J, Morín JA, Beltrán-Heredia E, Villaluenga JP, Ibarra B, Cao FJ.
PLoS One. 2017 Apr 5;12(4):e0174830
2016
Kinetic modeling of molecular motors: pause model and parameter determination from single-molecule experiments
José A Morin, Borja Ibarra and Francisco J Cao.
Journal of Statistical Mechanics: Theory and Experiment, Volume 2016, May 2016
2015
Mechano-chemical kinetics of DNA replication: identification of the translocation step of a replicative DNA polymerase
J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra
Nucleic Acid Research, 2015
2012
Manipulation of single polymerase-dna complexes: a mechanical view of dna unwinding during replication
Morin J.A., Cao F.J., Valpuesta J.M., Carrascosa J.L., Salas M., Ibarra B.
Cell Cycle 11(16): 2967- 2968
2015
Mechano-chemical kinetics of DNA replication: identification of the translocation step of a replicative DNA polymerase
J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra
Nucleic Acid Research, 2015
2012
Manipulation of single polymerase-dna complexes: a mechanical view of dna unwinding during replication
Morin J.A., Cao F.J., Valpuesta J.M., Carrascosa J.L., Salas M., Ibarra B.
Cell Cycle 11(16): 2967- 2968
2012
Active dna unwinding dynamics during processive dna replication
J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra
Proceedings of the National Academic of Sciences USA 109(21): 8115-20
2012
Mechanical stability of low-humidity single DNA molecules
Hormeño S., Ibarra B., Valpuesta J.M., Carrascosa J.L., Ricardo Arias-Gonzalez J.
Biopolymers 97(4): 199-208
2012
Active dna unwinding dynamics during processive dna replication
J.A. Morin, F.J. Cao, J.M. Lázaro, J.R. Arias-Gonzalez, J.M. Valpuesta, J.L. Carrascosa, M. Salas, B. Ibarra
Proceedings of the National Academic of Sciences USA 109(21): 8115-20
2012
Mechanical stability of low-humidity single DNA molecules
Hormeño S., Ibarra B., Valpuesta J.M., Carrascosa J.L., Ricardo Arias-Gonzalez J.
Biopolymers 97(4): 199-208
2011
Mechanical properties of high-G.C content DNA with a-type base-stacking
Hormeño S., Ibarra B., Carrascosa J.L., Valpuesta J.M., Moreno-Herrero F., Arias-Gonzalez JR.
Biophysical Journal 100(8): 1996-2005
2011
Condensation prevails over B-A transition in the structure of DNA at low humidity
Hormeño S., Moreno-Herrero F., Ibarra B., Carrascosa J.L., Valpuesta J.M., Arias-Gonzalez J.R.
Biophysical Journal 100(8): 2006-2015
2011
Mechanical properties of high-G.C content DNA with a-type base-stacking
Hormeño S., Ibarra B., Carrascosa J.L., Valpuesta J.M., Moreno-Herrero F., Arias-Gonzalez JR.
Biophysical Journal 100(8): 1996-2005
2011
Condensation prevails over B-A transition in the structure of DNA at low humidity
Hormeño S., Moreno-Herrero F., Ibarra B., Carrascosa J.L., Valpuesta J.M., Arias-Gonzalez J.R.
Biophysical Journal 100(8): 2006-2015
2009
Proofreading Dynamics of a Processive DNA Polymerase
Ibarra, B., Chemla Y., Plyasunov, S., Smith S.B., Salas M., Bustamante C.
EMBO Journal 28: 2794-2802
2009
Single centrosome manipulation reveals its electric charge and associated dynamic structure
Hormeño S., Ibarra B., Chichón F., Habermann K., Lange B., Valpuesta J.M., Carrascosa J.L., Arias-González J.R.
Biophysical Journal 97: 1022-1030
2009
Proofreading Dynamics of a Processive DNA Polymerase
Ibarra, B., Chemla Y., Plyasunov, S., Smith S.B., Salas M., Bustamante C.
EMBO Journal 28: 2794-2802
2009
Single centrosome manipulation reveals its electric charge and associated dynamic structure
Hormeño S., Ibarra B., Chichón F., Habermann K., Lange B., Valpuesta J.M., Carrascosa J.L., Arias-González J.R.
